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- Splice variants
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DB built by FlyBase

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Gene: wtrw FBgn0260005

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Description

water witch

Gene Synonyms

Location

Primary_assembly 3R: 7,891,331-7,901,147 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 38 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
wtrw-RC	FBtr0081755	3758	986aa	FBpp0081252	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHY7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
wtrw-RD	FBtr0339709	3757	969aa	FBpp0308766	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGT2	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
wtrw-RB	FBtr0081754	3738	986aa	FBpp0081251	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHY7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
wtrw-RA	FBtr0081753	3651	986aa	FBpp0081250	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5X0K8 Q6NQV8 Q9VHY7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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