Summary
- Splice variants
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Sequence
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Literature
Metazoan Compara
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- Gene tree (Insects)
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- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
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DB built by FlyBase

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Gene: Antp FBgn0260642

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Description

Antennapedia

Gene Synonyms

Location

Primary_assembly 3R: 6,896,253-6,999,228 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 12 transcripts (splice variants), 57 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Antp-RL	FBtr0081652	4902	378aa	FBpp0081162	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V2I6 P02833	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Antp-RD	FBtr0081648	4890	374aa	FBpp0089241	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSY5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Antp-RF	FBtr0081653	4863	365aa	FBpp0089244	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSY6	-	-
Antp-RK	FBtr0081656	4851	361aa	FBpp0089247	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSY7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Antp-RM	FBtr0081647	4691	378aa	FBpp0081161	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V2I6 P02833	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Antp-RN	FBtr0081651	4679	374aa	FBpp0089086	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSY5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Antp-RE	FBtr0081650	4652	365aa	FBpp0089243	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSY6	-	-
Antp-RG	FBtr0081649	4640	361aa	FBpp0089242	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSY7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Antp-RH	FBtr0081646	4111	297aa	FBpp0081160	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Antp-RO	FBtr0479859	3978	365aa	FBpp0428195	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSY6	-	-
Antp-RJ	FBtr0081655	3490	378aa	FBpp0089246	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V2I6 D6W4V0 P02833	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Antp-RI	FBtr0081654	3279	378aa	FBpp0089245	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V2I6 P02833	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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