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DB built by FlyBase

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Gene: Vmat FBgn0260964

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Description

Vesicular monoamine transporter

Gene Synonyms

Location

Primary_assembly 2R: 13,513,132-13,534,251 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 4 transcripts (splice variants), 71 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Vmat-RD	FBtr0091492	2446	646aa	FBpp0090962	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IH57	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Vmat-RE	FBtr0091491	7325	610aa	FBpp0090961	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86NW1 Q8IGS0 Q8MT20	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Vmat-RF	FBtr0310062	7141	610aa	FBpp0301763	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86NW1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Vmat-RC	FBtr0091493	2470	610aa	FBpp0090963	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86NW1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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