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- Splice variants
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DB built by FlyBase

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Gene: rtv FBgn0261277

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Description

retroactive

Gene Synonyms

Location

Primary_assembly X: 11,152,484-11,153,990 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants) and 30 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
rtv-RD	FBtr0346379	1186	151aa	FBpp0312073	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VZ21	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
rtv-RA	FBtr0073470	1063	151aa	FBpp0073326	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B4F5Y8 B4F5Z0 B4F5Z3 B4F5Z5 B4F5Z6 Q9VZ21	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
rtv-RB	FBtr0331742	1006	151aa	FBpp0304131	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VZ21	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
rtv-RC	FBtr0331743	964	65aa	FBpp0304132	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJI2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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