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DB built by FlyBase

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Gene: ps FBgn0261552

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Description

pasilla

Gene Synonyms

Location

Primary_assembly 3R: 9,417,940-9,455,500 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 18 transcripts (splice variants), 91 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ps-RR	FBtr0334304	3624	780aa	FBpp0306419	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGY6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ps-RN	FBtr0302692	10124	572aa	FBpp0291832	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GQN4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ps-RK	FBtr0111032	10086	550aa	FBpp0110331	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI96	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ps-RS	FBtr0344283	10080	594aa	FBpp0310688	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGY5	-	-
ps-RI	FBtr0111030	4635	519aa	FBpp0110329	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI94 Q6AWM9	-	-
ps-RB	FBtr0082037	4508	475aa	FBpp0081515	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GNC8	-	-
ps-RL	FBtr0302691	3964	758aa	FBpp0291831	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JCX5 C9QP09	-	-
ps-RH	FBtr0111029	3736	572aa	FBpp0110328	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GQN4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ps-RF	FBtr0111027	3538	572aa	FBpp0110326	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GQN4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ps-RO	FBtr0302693	3514	572aa	FBpp0291833	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GQN4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ps-RP	FBtr0302695	3472	550aa	FBpp0291835	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI96	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ps-RG	FBtr0111028	3301	572aa	FBpp0110327	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GQN4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ps-RM	FBtr0302694	3238	550aa	FBpp0291834	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A023UKB8 Q0KI96	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ps-RT	FBtr0344284	2889	616aa	FBpp0310689	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LI06	-	-
ps-RD	FBtr0082038	2685	583aa	FBpp0081516	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8INP0	-	-
ps-RC	FBtr0082039	2619	561aa	FBpp0081517	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGS7 Q9GQN3	-	-
ps-RJ	FBtr0111031	2558	539aa	FBpp0110330	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T4D1	-	-
ps-RQ	FBtr0334303	2492	517aa	FBpp0306418	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFY5	-	-

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Summary

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