Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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- GO: Cellular component
- GO: Molecular function
- GO: Biological process
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Genetic Variation
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DB built by FlyBase

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Gene: CG42671 FBgn0261553

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Location

Primary_assembly 3L: 11,214,505-11,230,745 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 11 transcripts (splice variants) and 2 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42671-RL	FBtr0345849	5753	1302aa	FBpp0311808	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEP5 X2JGK1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42671-RJ	FBtr0339906	5900	1234aa	FBpp0308938	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J8Y9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42671-RK	FBtr0339907	5520	1302aa	FBpp0308939	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JGK1	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42671-RG	FBtr0304933	4917	1233aa	FBpp0293472	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42671-RH	FBtr0304934	4879	1233aa	FBpp0293473	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42671-RC	FBtr0302697	4852	1233aa	FBpp0291837	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42671-RE	FBtr0302699	4818	1233aa	FBpp0291839	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NR26 Q9VTH2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42671-RB	FBtr0302696	4814	1233aa	FBpp0291836	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42671-RI	FBtr0330283	4814	1244aa	FBpp0303315	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PF53	-	-
CG42671-RD	FBtr0302698	4501	1301aa	FBpp0291838	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRS6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42671-RF	FBtr0302700	4463	1301aa	FBpp0291840	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRS6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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