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DB built by FlyBase

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Gene: larp FBgn0261618

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Description

La related protein

Gene Synonyms

Location

Primary_assembly 3R: 28,318,162-28,336,440 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 7 transcripts (splice variants), 88 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
larp-RD	FBtr0301180	8064	1673aa	FBpp0290398	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7Y7 Q9VAW5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
larp-RH	FBtr0306390	7919	1673aa	FBpp0297482	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7Y7 F9W325 Q9VAW5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
larp-RG	FBtr0306389	7915	1673aa	FBpp0297481	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7Y7 Q9VAW5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
larp-RF	FBtr0306388	7070	1409aa	FBpp0297480	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6K9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
larp-RE	FBtr0301181	6820	965aa	FBpp0290399	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F9W345	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
larp-RB	FBtr0089682	6757	965aa	FBpp0088624	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F9W345	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
larp-RA	FBtr0089680	6745	965aa	FBpp0088622	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1NZB5 F9W345	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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