Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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- Structural variants
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ID History
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DB built by FlyBase

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Gene: cic FBgn0262582

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Description

capicua

Gene Synonyms

Location

Primary_assembly 3R: 20,252,770-20,303,942 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 72 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
cic-RG	FBtr0334305	10984	2150aa	FBpp0306420	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
cic-RD	FBtr0305029	7259	2141aa	FBpp0293566	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K698 D0IQJ5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cic-RB	FBtr0305027	6454	1832aa	FBpp0293564	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U1H0	-	-
cic-RA	FBtr0305026	5167	1403aa	FBpp0293563	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
cic-RC	FBtr0305028	5152	1427aa	FBpp0293565	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K778	-	-
cic-RH	FBtr0334306	4940	1275aa	FBpp0306421	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6D6	-	-

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Summary

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