Summary
- Splice variants
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DB built by FlyBase

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Gene: SERCA FBgn0263006

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Description

Sarco/endoplasmic reticulum Ca(2+)-ATPase

Gene Synonyms

Location

Primary_assembly 2R: 23,925,077-23,935,884 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 9 transcripts (splice variants), 90 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
SERCA-RH	FBtr0072216	5028	1020aa	FBpp0072125	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
SERCA-RI	FBtr0343281	6306	999aa	FBpp0309946	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGB7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
SERCA-RA	FBtr0072215	3890	1002aa	FBpp0072124	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
SERCA-RF	FBtr0072218	3839	1020aa	FBpp0072127	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
SERCA-RC	FBtr0072217	3395	1020aa	FBpp0072126	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
SERCA-RB	FBtr0072213	3385	1020aa	FBpp0072122	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
SERCA-RE	FBtr0072212	3310	1020aa	FBpp0072121	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
SERCA-RG	FBtr0072211	3269	1020aa	FBpp0072120	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
SERCA-RD	FBtr0072214	3259	1020aa	FBpp0072123	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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