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DB built by FlyBase

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Gene: Acsl FBgn0263120

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Description

Acyl-CoA synthetase long-chain

Gene Synonyms

Location

Primary_assembly 2R: 8,665,813-8,683,022 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 10 transcripts (splice variants), 124 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Acsl-RJ	FBtr0333001	3061	728aa	FBpp0305216	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFE4 H1UUA9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Acsl-RH	FBtr0100430	3887	715aa	FBpp0099849	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T3L1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Acsl-RE	FBtr0100427	3852	715aa	FBpp0099846	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T3L1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Acsl-RA	FBtr0088699	3704	715aa	FBpp0087779	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T3L1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Acsl-RB	FBtr0088700	3677	715aa	FBpp0087780	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86NS4 Q8T3L1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Acsl-RG	FBtr0100429	3534	707aa	FBpp0099848	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7H3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Acsl-RD	FBtr0100426	3452	717aa	FBpp0099845	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7H2	-	-
Acsl-RF	FBtr0100428	3409	707aa	FBpp0099847	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7H3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Acsl-RI	FBtr0100431	3353	707aa	FBpp0099850	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7H3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Acsl-RC	FBtr0088701	3117	707aa	FBpp0087781	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7H3 Q960I0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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