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DB built by FlyBase

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Gene: Patronin FBgn0263197

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Description

Patronin

Gene Synonyms

Location

Primary_assembly 2R: 17,519,024-17,535,866 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 13 transcripts (splice variants) and 84 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Patronin-RI	FBtr0332260	6195	1689aa	FBpp0304550	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEY4 H6WS59	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RD	FBtr0273446	6782	1663aa	FBpp0271954	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZJ1 Q8T0T0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RO	FBtr0332266	6177	1683aa	FBpp0304556	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH91	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RK	FBtr0332262	6168	1680aa	FBpp0304552	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFA4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RJ	FBtr0332261	6150	1674aa	FBpp0304551	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KET5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Patronin-RF	FBtr0300603	6141	1671aa	FBpp0289830	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH90	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RN	FBtr0332265	6110	1439aa	FBpp0304555	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEY6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RC	FBtr0086950	6018	1630aa	FBpp0086106	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAU8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RE	FBtr0273447	5925	1599aa	FBpp0271955	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZJ2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RL	FBtr0332263	5742	1538aa	FBpp0304553	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG58	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RM	FBtr0332264	5640	1504aa	FBpp0304554	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFU3 A0A0U3DWR7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RA	FBtr0086948	5507	1517aa	FBpp0086104	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Patronin-RB	FBtr0086949	5163	1540aa	FBpp0086105	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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