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DB built by FlyBase

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Gene: chas FBgn0263258

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Description

chascon

Gene Synonyms

Location

Primary_assembly X: 17,672,458-17,698,730 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 5 transcripts (splice variants) and 15 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
chas-RD	FBtr0340635	5746	1558aa	FBpp0309499	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JE77	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
chas-RA	FBtr0074477	5224	1359aa	FBpp0074251	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VX26	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
chas-RE	FBtr0340636	5219	1031aa	FBpp0309500	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUW6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
chas-RC	FBtr0340634	5175	1359aa	FBpp0309498	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YU70 Q8MT64 Q9VX26	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
chas-RB	FBtr0074478	4682	1031aa	FBpp0074252	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUW6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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