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DB built by FlyBase

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Gene: Trpm FBgn0265194

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Description

Transient receptor potential cation channel, subfamily M

Gene Synonyms

Location

Primary_assembly 2R: 15,262,808-15,309,368 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 11 transcripts (splice variants) and 117 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Trpm-RL	FBtr0481669	7964	2056aa	FBpp0428447	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Trpm-RH	FBtr0339080	7700	1968aa	FBpp0308226	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGJ2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trpm-RI	FBtr0339081	7638	1953aa	FBpp0308227	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFE7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trpm-RK	FBtr0481668	7607	1937aa	FBpp0428446	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Trpm-RG	FBtr0339079	7419	1928aa	FBpp0308225	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZH3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trpm-RF	FBtr0339078	7253	1996aa	FBpp0308224	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Trpm-RA	FBtr0339074	7239	1939aa	FBpp0308220	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2N016 B7YZH4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trpm-RE	FBtr0339077	7114	2023aa	FBpp0308223	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYE2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trpm-RD	FBtr0339076	7028	1921aa	FBpp0308222	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trpm-RJ	FBtr0339082	6833	1856aa	FBpp0308228	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LF73	-	-
Trpm-RB	FBtr0339075	4880	1131aa	FBpp0308221	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-

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Summary

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