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DB built by FlyBase

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Gene: nAChRalpha4 FBgn0266347

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Description

nicotinic Acetylcholine Receptor alpha4

Gene Synonyms

Location

Primary_assembly 3L: 23,206,669-23,287,448 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 6 transcripts (splice variants), 82 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nAChRalpha4-RC	FBtr0300118	5645	539aa	FBpp0289395	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNX5 Q9NFR5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nAChRalpha4-RH	FBtr0346707	5645	539aa	FBpp0312320	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0WNY8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nAChRalpha4-RD	FBtr0308330	5464	371aa	FBpp0300649	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE13	-	-
nAChRalpha4-RF	FBtr0308332	2354	371aa	FBpp0300651	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE13	-	-
nAChRalpha4-RG	FBtr0332872	2281	499aa	FBpp0305094	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDC9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
nAChRalpha4-RE	FBtr0308331	1509	384aa	FBpp0300650	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q058T0 Q95RL8	-	-

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Summary

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