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DB built by FlyBase

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Gene: wake FBgn0266418

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Description

wide awake

Gene Synonyms

Location

Primary_assembly 3R: 22,639,808-22,683,827 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 7 transcripts (splice variants) and 10 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
wake-RG	FBtr0344408	5917	1648aa	FBpp0310776	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X4YX01	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
wake-RC	FBtr0344405	7092	1553aa	FBpp0310773	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6W6 D0Z761	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
wake-RH	FBtr0344409	6723	1403aa	FBpp0310777	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHH4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
wake-RE	FBtr0344407	5224	1417aa	FBpp0310775	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6D0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
wake-RD	FBtr0344406	5188	1417aa	FBpp0310774	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6D0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
wake-RF	FBtr0344403	4973	1255aa	FBpp0310771	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RQ9 Q9VCW7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
wake-RB	FBtr0344404	4933	1255aa	FBpp0310772	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VCW7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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