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DB built by FlyBase

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Gene: Bsg25D FBgn0000228

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Description

Blastoderm-specific gene 25D

Gene Synonyms

Location

Primary_assembly 2L: 5,271,728-5,278,548 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 7 transcripts (splice variants) and 109 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Bsg25D-RG	FBtr0310625	4666	1118aa	FBpp0302745	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PC27	NM_001273164 NM_001273164.2 NP_001260093 NP_001260093.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Bsg25D-RB	FBtr0079084	4585	1091aa	FBpp0078718	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMS6	NM_164637 NM_164637.3 NP_723072 NP_723072.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Bsg25D-RE	FBtr0302568	4549	1079aa	FBpp0291724	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G2J635 M9MRD3	NM_001201770 NM_001201770.2 NP_001188699 NP_001188699.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Bsg25D-RF	FBtr0310624	4525	1071aa	FBpp0302744	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA5 M9PB42	NM_001273163 NM_001273163.2 NP_001260092 NP_001260092.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Bsg25D-RC	FBtr0079085	4065	1032aa	FBpp0078719	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPK8	NM_164638 NM_164638.3 NP_723073 NP_723073.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Bsg25D-RH	FBtr0342939	3010	820aa	FBpp0309716	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P11929	NM_057568 NM_057568.6 NP_476916 NP_476916.4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Bsg25D-RD	FBtr0302567	2514	769aa	FBpp0291723	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9QPC2	NM_001201769 NM_001201769.2 NP_001188698 NP_001188698.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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