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DB built by FlyBase

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Gene: ftz-f1 FBgn0001078

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Description

ftz transcription factor 1

Gene Synonyms

Location

Primary_assembly 3L: 18,750,607-18,801,309 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 60 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ftz-f1-RB	FBtr0075086	5407	1027aa	FBpp0074853	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D5SHV1 P33244	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ftz-f1-RD	FBtr0347045	6060	853aa	FBpp0312453	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0WH29	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ftz-f1-RC	FBtr0304627	5910	803aa	FBpp0293169	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFK2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ftz-f1-RA	FBtr0075087	3980	803aa	FBpp0074854	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFK2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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