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Summary
- Splice variants
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DB built by FlyBase

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Gene: hth FBgn0001235

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Description

homothorax

Gene Synonyms

Location

Primary_assembly 3R: 10,507,561-10,639,568 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 66 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
hth-RC	FBtr0082255	6557	487aa	FBpp0081732	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O46339	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
hth-RI	FBtr0344145	6340	266aa	FBpp0310558	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
hth-RA	FBtr0082256	4226	472aa	FBpp0081733	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
hth-RE	FBtr0100454	3868	266aa	FBpp0099878	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J7HAH8	-	-
hth-RF	FBtr0100455	2462	266aa	FBpp0099879	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-

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Summary

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