homothorax
Primary_assembly 3R: 10,507,561-10,639,568 reverse strand.
BDGP6.32:AE014297.3
This gene has 5 transcripts (splice variants), 117 orthologues and 3 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| hth-RC | FBtr0082255 | 6557 | 487aa | FBpp0081732 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | O46339 | NM_001014613.3 NM_001031999.2 NM_057228 NM_057228.5 NM_057229.5 NM_057230.6 NP_001014613.2 NP_001027170.1 NP_476576 NP_476576.1 NP_476577.3 NP_476578.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| hth-RI | FBtr0344145 | 6340 | 266aa | FBpp0310558 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_001031999.2 NM_057229 NM_057229.5 NP_001027170.1 NP_476577 NP_476577.3 | - |
| hth-RA | FBtr0082256 | 4226 | 472aa | FBpp0081733 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_057230 NP_476578 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| hth-RE | FBtr0100454 | 3868 | 266aa | FBpp0099878 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J7HAH8 | NM_001014613 NM_001014613.3 NP_001014613 NP_001014613.2 | - |
| hth-RF | FBtr0100455 | 2462 | 266aa | FBpp0099879 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_001031999 NM_001031999.2 NM_057229.5 NP_001027170 NP_001027170.1 NP_476577.3 | - |
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