Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: raw FBgn0003209

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Description

raw

Location

Primary_assembly 2L: 8,709,880-8,740,660 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 5 transcripts (splice variants) and 50 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
raw-RE	FBtr0340232	4275	989aa	FBpp0309207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VLI4	NM_001201804.1 NM_001298831 NM_001298831.1 NM_164836.3 NP_001188733.1 NP_001285760 NP_001285760.1 NP_723416.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
raw-RC	FBtr0303868	3954	989aa	FBpp0292871	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VLI4	NM_001201804 NM_001201804.1 NM_001298831.1 NM_164836.3 NP_001188733 NP_001188733.1 NP_001285760.1 NP_723416.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
raw-RA	FBtr0079746	3754	989aa	FBpp0079348	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NJ08 Q9VLI4	NM_001201804.1 NM_001298831.1 NM_164836 NM_164836.3 NP_001188733.1 NP_001285760.1 NP_723416 NP_723416.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
raw-RD	FBtr0340231	3404	832aa	FBpp0309206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J5A2	NM_001298830 NM_001298830.1 NP_001285759 NP_001285759.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
raw-RB	FBtr0079745	3220	805aa	FBpp0079347	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MT71 Q9U3Z6 Q9VLI5	NM_080050 NM_080050.3 NP_524789 NP_524789.2	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2

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Summary

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Gene-based displays