Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
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Genetic Variation
- Variant table
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- Structural variants
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DB built by FlyBase

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Gene: raw FBgn0003209

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Description

raw

Gene Synonyms

Location

Primary_assembly 2L: 8,709,880-8,740,660 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 5 transcripts (splice variants) and 45 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
raw-RE	FBtr0340232	4275	989aa	FBpp0309207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VLI4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
raw-RC	FBtr0303868	3954	989aa	FBpp0292871	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VLI4	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
raw-RA	FBtr0079746	3754	989aa	FBpp0079348	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NJ08 Q9VLI4	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
raw-RD	FBtr0340231	3404	832aa	FBpp0309206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J5A2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
raw-RB	FBtr0079745	3220	805aa	FBpp0079347	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MT71 Q9U3Z6 Q9VLI5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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