Rm62
Primary_assembly 3R: 6,000,426-6,008,579 reverse strand.
BDGP6.32:AE014297.3
This gene has 12 transcripts (splice variants), 94 orthologues and 30 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Rm62-RA | FBtr0078652 | 2995 | 719aa | FBpp0078301 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P19109 | NM_001170057.1 NM_001202253.2 NM_079519 NM_079519.2 NM_169118.1 NM_169119.3 NM_169120.1 NM_169121.2 NM_169122.1 NP_001163528.1 NP_001189182.1 NP_524243 NP_524243.2 NP_731031.1 NP_731032.1 NP_731033.1 NP_731034.1 NP_731035.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rm62-RJ | FBtr0309319 | 4362 | 458aa | FBpp0301223 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K624 I0B1P2 | NM_001260009 NM_001260009.1 NP_001246938 NP_001246938.1 | - |
| Rm62-RL | FBtr0309321 | 3793 | 473aa | FBpp0301225 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6A3 | NM_001260011 NM_001260011.1 NP_001246940 NP_001246940.1 | - |
| Rm62-RK | FBtr0309320 | 3683 | 485aa | FBpp0301224 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6T7 | NM_001260010 NM_001260010.1 NP_001246939 NP_001246939.1 | - |
| Rm62-RM | FBtr0309322 | 3411 | 478aa | FBpp0301226 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6K1 | NM_001260012 NM_001260012.1 NP_001246941 NP_001246941.1 | - |
| Rm62-RE | FBtr0078653 | 3160 | 578aa | FBpp0078302 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C7LAE4 | NM_001202253.2 NM_169119 NM_169119.3 NP_001189182.1 NP_731032 NP_731032.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rm62-RI | FBtr0302597 | 3153 | 578aa | FBpp0291753 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C7LAE4 | NM_001202253 NM_001202253.2 NM_169119.3 NP_001189182 NP_001189182.1 NP_731032.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rm62-RB | FBtr0078651 | 3087 | 578aa | FBpp0078300 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_169120.1 NM_169121.2 NM_169122 NM_169122.1 NP_731033.1 NP_731034.1 NP_731035 NP_731035.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rm62-RC | FBtr0078649 | 2849 | 578aa | FBpp0078298 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_169120 NM_169120.1 NM_169121.2 NM_169122.1 NP_731033 NP_731033.1 NP_731034.1 NP_731035.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rm62-RF | FBtr0078654 | 2833 | 578aa | FBpp0078303 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_169120.1 NM_169121 NM_169121.2 NM_169122.1 NP_731033.1 NP_731034 NP_731034.1 NP_731035.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rm62-RH | FBtr0301947 | 2760 | 575aa | FBpp0291159 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JJ68 | NM_001170057 NM_001170057.1 NM_169118.1 NP_001163528 NP_001163528.1 NP_731031.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rm62-RD | FBtr0078650 | 2757 | 575aa | FBpp0078299 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JJ68 | NM_001170057.1 NM_169118 NM_169118.1 NP_001163528.1 NP_731031 NP_731031.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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