Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: shi FBgn0003392

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Description

shibire

Gene Synonyms

Location

Primary_assembly X: 15,892,116-15,906,716 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 15 transcripts (splice variants), 225 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
shi-RN	FBtr0333717	3712	896aa	FBpp0305866	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHQ0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
shi-RO	FBtr0333718	4768	834aa	FBpp0305867	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NH48 M9PJN9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
shi-RI	FBtr0111037	4321	830aa	FBpp0110336	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4J0	-	-
shi-RH	FBtr0111036	4309	830aa	FBpp0110335	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4J0	-	-
shi-RM	FBtr0301597	4198	836aa	FBpp0290812	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJA5	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
shi-RB	FBtr0074118	4180	830aa	FBpp0073928	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4J0 F6J774	-	-
shi-RE	FBtr0074122	3991	830aa	FBpp0089279	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4J0	-	-
shi-RA	FBtr0074121	3990	830aa	FBpp0089278	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4J0	-	-
shi-RC	FBtr0074119	3878	830aa	FBpp0073929	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4J0	-	-
shi-RP	FBtr0340413	3667	881aa	FBpp0309359	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JE15	-	-
shi-RJ	FBtr0301594	3380	877aa	FBpp0290809	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4I8 P27619	-	-
shi-RK	FBtr0301595	3300	877aa	FBpp0290810	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4I8 P27619	-	-
shi-RF	FBtr0074123	3191	877aa	FBpp0089280	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4I8 F6J732 P27619	-	-
shi-RG	FBtr0074124	3190	877aa	FBpp0089277	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4I8 P27619	-	-
shi-RL	FBtr0301596	3096	883aa	FBpp0290811	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJA4	-	-

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Summary

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