Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: spir FBgn0003475

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Description

spire

Location

Primary_assembly 2L: 20,311,219-20,348,386 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 10 transcripts (splice variants) and 83 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
spir-RJ	FBtr0339234	5598	586aa	FBpp0308341	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFB6	NM_001259173.1 NM_001299171 NM_001299171.1 NP_001246102.1 NP_001286100 NP_001286100.1
spir-RA	FBtr0081352	4881	1020aa	FBpp0080884	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U1K1	NM_001259173.1 NM_001299171.1 NM_080115.3 NM_165323 NM_165323.3 NM_165324.2 NM_165325.3 NP_001246102.1 NP_001286100.1 NP_524854.2 NP_724254 NP_724254.1 NP_724255.1 NP_724256.2	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
spir-RF	FBtr0306556	4875	1018aa	FBpp0297511	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDT9	NM_001259172 NM_001259172.2 NP_001246101 NP_001246101.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
spir-RB	FBtr0081353	4794	991aa	FBpp0080885	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_080115 NM_080115.3 NP_524854 NP_524854.2	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
spir-RE	FBtr0301884	4791	990aa	FBpp0291098	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHM3	NM_001169549 NM_001169549.1 NP_001163020 NP_001163020.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
spir-RC	FBtr0081355	3437	625aa	FBpp0080887	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5RIQ1	NM_165325 NM_165325.3 NP_724256 NP_724256.2
spir-RG	FBtr0307893	2669	586aa	FBpp0300327	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFB6	NM_001259173 NM_001259173.1 NM_001299171.1 NP_001246102 NP_001246102.1 NP_001286100.1
spir-RD	FBtr0081354	2666	585aa	FBpp0080886	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4G7C9 D5AEN6	NM_165324 NM_165324.2 NP_724255 NP_724255.1
spir-RI	FBtr0339233	2212	498aa	FBpp0308340	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J709	NM_001299170 NM_001299170.1 NP_001286099 NP_001286099.1
spir-RH	FBtr0307894	2182	488aa	FBpp0300328	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NH98 M9NCY7	NM_001259174 NM_001259174.1 NP_001246103 NP_001246103.1

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Summary

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Gene-based displays