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DB built by FlyBase

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Gene: B52 FBgn0004587

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Description

B52

Gene Synonyms

Location

Primary_assembly 3R: 13,661,311-13,666,891 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 10 transcripts (splice variants), 90 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
B52-RM	FBtr0308195	1590	355aa	FBpp0300515	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0C4DHG5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
B52-RK	FBtr0300588	3966	147aa	FBpp0289815	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
B52-RF	FBtr0082804	3958	147aa	FBpp0082272	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
B52-RI	FBtr0300586	3563	135aa	FBpp0289813	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
B52-RD	FBtr0082803	3045	135aa	FBpp0082271	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
B52-RN	FBtr0308196	1725	350aa	FBpp0300516	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
B52-RB	FBtr0082802	1643	329aa	FBpp0082270	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
B52-RO	FBtr0308197	1580	355aa	FBpp0300517	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0C4DHG5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
B52-RA	FBtr0082801	1565	350aa	FBpp0082269	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P26686	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
B52-RC	FBtr0082806	1557	350aa	FBpp0082274	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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