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- Splice variants
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DB built by FlyBase

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Gene: sim FBgn0004666

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Description

single-minded

Gene Synonyms

Location

Primary_assembly 3R: 13,057,755-13,078,124 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 89 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sim-RA	FBtr0082710	2825	688aa	FBpp0082178	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P05709	NM_079616 NP_524340	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
sim-RD	FBtr0334614	3186	672aa	FBpp0306681	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFY1	NM_001275599 NM_001275599.1 NP_001262528 NP_001262528.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sim-RB	FBtr0082711	3162	664aa	FBpp0082179	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_169495 NP_731771	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sim-RC	FBtr0334613	2882	675aa	FBpp0306680	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH05	NM_001275598 NM_001275598.2 NP_001262527 NP_001262527.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays