Summary
- Splice variants
- Transcript comparison
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Sequence
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- Orthologues
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: retn FBgn0004795

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Description

retained

Gene Synonyms

Location

Primary_assembly 2R: 23,632,610-23,654,820 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants) and 49 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
retn-RB	FBtr0072073	4306	911aa	FBpp0071982	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24573	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
retn-RA	FBtr0072072	4291	906aa	FBpp0071981	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
retn-RC	FBtr0340029	4142	904aa	FBpp0309043	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGF9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
retn-RE	FBtr0340031	3535	654aa	FBpp0309045	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGB3	-	-
retn-RD	FBtr0340030	3051	635aa	FBpp0309044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHB8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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