Summary
- Splice variants
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DB built by FlyBase

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Gene: Hdc FBgn0005619

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Description

Histidine decarboxylase

Gene Synonyms

Location

Primary_assembly 2R: 10,237,988-10,246,077 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 4 transcripts (splice variants), 158 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Hdc-RD	FBtr0345474	3733	847aa	FBpp0311591	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I0B8M2 Q05733	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Hdc-RC	FBtr0331924	3313	619aa	FBpp0304257	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEQ1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Hdc-RB	FBtr0331923	3300	847aa	FBpp0304256	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I0B8M2 Q05733	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Hdc-RA	FBtr0088333	3270	847aa	FBpp0087422	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6IDW5 I0B8M2 Q05733	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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