Summary
- Splice variants
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DB built by FlyBase

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Gene: HLH4C FBgn0011277

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Description

Helix loop helix protein 4C

Gene Synonyms

Location

Primary_assembly X: 4,645,127-4,647,414 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 2 transcripts (splice variants), 113 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
HLH4C-RB	FBtr0331163	1424	191aa	FBpp0303590	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH26	NM_001272314 NM_001272314.1 NP_001259243 NP_001259243.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
HLH4C-RA	FBtr0070691	1424	167aa	FBpp0070659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O77278 Q24353 Q9W4I4	NM_057641 NM_057641.3 NP_476989 NP_476989.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays