Trithorax-like
Primary_assembly 3L: 14,747,929-14,761,049 reverse strand.
BDGP6.32:AE014296.5
This gene has 10 transcripts (splice variants), 60 orthologues and 14 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Trl-RK | FBtr0333046 | 3145 | 623aa | FBpp0305260 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PFM7 | NM_001274917 NM_001274917.1 NP_001261846 NP_001261846.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Trl-RB | FBtr0075707 | 4441 | 519aa | FBpp0089419 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V1Y7 | NM_001038925.3 NM_206355.4 NM_206356 NM_206356.3 NM_206357.3 NM_206359.4 NP_001034014.1 NP_996077.1 NP_996078 NP_996078.1 NP_996079.1 NP_996081.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Trl-RD | FBtr0075706 | 4015 | 519aa | FBpp0089418 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V1Y7 I1V4Z0 I1V4Z1 | NM_001038925.3 NM_206355.4 NM_206356.3 NM_206357 NM_206357.3 NM_206359.4 NP_001034014.1 NP_996077.1 NP_996078.1 NP_996079 NP_996079.1 NP_996081.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Trl-RJ | FBtr0333045 | 3814 | 608aa | FBpp0305259 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q2PDY1 | NM_001038924 NM_001038924.4 NP_001034013 NP_001034013.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Trl-RI | FBtr0100445 | 3806 | 567aa | FBpp0099867 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I1V4Z2 Q2PDY2 Q8MYL2 | NM_001038926 NM_001038926.2 NP_001034015 NP_001034015.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Trl-RA | FBtr0075705 | 3197 | 582aa | FBpp0089417 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V1Y6 | NM_206358 NM_206358.4 NM_206360.1 NP_996080 NP_996080.1 NP_996082.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Trl-RF | FBtr0075703 | 2613 | 582aa | FBpp0089415 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V1Y6 C3KGN3 I1V4Y9 Q08605 | NM_206358.4 NM_206360 NM_206360.1 NP_996080.1 NP_996082 NP_996082.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Trl-RE | FBtr0075704 | 2156 | 519aa | FBpp0089416 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V1Y7 | NM_001038925.3 NM_206355.4 NM_206356.3 NM_206357.3 NM_206359 NM_206359.4 NP_001034014.1 NP_996077.1 NP_996078.1 NP_996079.1 NP_996081 NP_996081.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Trl-RC | FBtr0075708 | 1977 | 519aa | FBpp0089411 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V1Y7 | NM_001038925.3 NM_206355 NM_206355.4 NM_206356.3 NM_206357.3 NM_206359.4 NP_001034014.1 NP_996077 NP_996077.1 NP_996078.1 NP_996079.1 NP_996081.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Trl-RH | FBtr0100444 | 1911 | 519aa | FBpp0099866 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V1Y7 | NM_001038925 NM_001038925.3 NM_206355.4 NM_206356.3 NM_206357.3 NM_206359.4 NP_001034014 NP_001034014.1 NP_996077.1 NP_996078.1 NP_996079.1 NP_996081.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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