Summary
- Splice variants
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: Trl FBgn0013263

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Description

Trithorax-like

Gene Synonyms

Location

Primary_assembly 3L: 14,747,929-14,761,049 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 10 transcripts (splice variants), 63 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Trl-RK	FBtr0333046	3145	623aa	FBpp0305260	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFM7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Trl-RB	FBtr0075707	4441	519aa	FBpp0089419	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1Y7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trl-RD	FBtr0075706	4015	519aa	FBpp0089418	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1Y7 I1V4Z0 I1V4Z1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trl-RJ	FBtr0333045	3814	608aa	FBpp0305259	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PDY1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trl-RI	FBtr0100445	3806	567aa	FBpp0099867	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I1V4Z2 Q2PDY2 Q8MYL2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trl-RA	FBtr0075705	3197	582aa	FBpp0089417	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1Y6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trl-RF	FBtr0075703	2613	582aa	FBpp0089415	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1Y6 C3KGN3 I1V4Y9 Q08605	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trl-RE	FBtr0075704	2156	519aa	FBpp0089416	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1Y7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trl-RC	FBtr0075708	1977	519aa	FBpp0089411	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1Y7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trl-RH	FBtr0100444	1911	519aa	FBpp0099866	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1Y7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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