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DB built by FlyBase

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Gene: Sap47 FBgn0013334

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Description

Synapse-associated protein 47kD

Gene Synonyms

Location

Primary_assembly 3R: 15,935,100-15,962,124 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 12 transcripts (splice variants) and 71 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Sap47-RA	FBtr0083204	5235	551aa	FBpp0082658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q960T2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Sap47-RB	FBtr0083205	5972	374aa	FBpp0082659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Sap47-RF	FBtr0083209	5903	351aa	FBpp0082663	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sap47-RK	FBtr0344384	5288	347aa	FBpp0310757	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LH71	-	-
Sap47-RL	FBtr0474164	5277	479aa	FBpp0423163	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K1Y5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sap47-RI	FBtr0301655	5196	347aa	FBpp0290869	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LH71	-	-
Sap47-RD	FBtr0083207	5171	551aa	FBpp0082661	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q960T2	-	-
Sap47-RE	FBtr0083208	4989	551aa	FBpp0082662	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q960T2	-	-
Sap47-RC	FBtr0083206	4843	551aa	FBpp0082660	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q960T2	-	-
Sap47-RM	FBtr0474165	4819	551aa	FBpp0423164	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K595	-	-
Sap47-RG	FBtr0083210	4819	535aa	FBpp0082664	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Sap47-RJ	FBtr0310672	2968	344aa	FBpp0302792	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F3YDF6	-	-

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Summary

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