Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: CASK FBgn0013759

.

Description

CASK

Gene Synonyms

Location

Primary_assembly 3R: 21,783,400-21,822,674 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 8 transcripts (splice variants), 70 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CASK-RH	FBtr0330368	4128	929aa	FBpp0303394	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH39	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CASK-RF	FBtr0301327	6544	916aa	FBpp0290542	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIS7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CASK-RG	FBtr0301328	4071	609aa	FBpp0290543	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
CASK-RD	FBtr0112872	4017	591aa	FBpp0111785	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JR71	-	-
CASK-RB	FBtr0084161	3965	898aa	FBpp0083559	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24210	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CASK-RA	FBtr0084162	3949	591aa	FBpp0083560	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JR71	-	-
CASK-RI	FBtr0479755	3164	522aa	FBpp0428098	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EEU7	-	-
CASK-RE	FBtr0112873	2586	469aa	FBpp0111786	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JR72	-	-

.

Summary

.

.