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DB built by FlyBase

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Gene: Calx FBgn0013995

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Description

Na/Ca-exchange protein

Gene Synonyms

Location

Primary_assembly 3R: 20,978,183-21,015,613 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 9 transcripts (splice variants) and 174 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Calx-RG	FBtr0309205	6705	973aa	FBpp0301144	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6E2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Calx-RI	FBtr0344317	7361	657aa	FBpp0310709	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHD9	-	-
Calx-RA	FBtr0083998	6137	950aa	FBpp0083402	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O18367 Q24413 Q9VDG5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Calx-RH	FBtr0344316	5947	955aa	FBpp0310708	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHD7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Calx-RC	FBtr0084000	4728	950aa	FBpp0083404	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VDG5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Calx-RF	FBtr0309204	4127	960aa	FBpp0301143	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6A6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Calx-RB	FBtr0083999	3786	950aa	FBpp0083403	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VDG5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Calx-RD	FBtr0309202	3734	950aa	FBpp0301141	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6R7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Calx-RE	FBtr0309203	3589	963aa	FBpp0301142	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K790	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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