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- Splice variants
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DB built by FlyBase

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Gene: Hr78 FBgn0015239

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Description

Hormone-receptor-like in 78

Gene Synonyms

Location

Primary_assembly 3L: 21,494,019-21,497,494 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 6 transcripts (splice variants), 150 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Hr78-RD	FBtr0078392	2345	601aa	FBpp0089291	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NH28 H9ZJM0 M9MS41 Q24142	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Hr78-RA	FBtr0078391	2339	599aa	FBpp0078046	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Hr78-RC	FBtr0078390	2311	601aa	FBpp0078045	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS41 Q24142	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Hr78-RB	FBtr0078389	2266	601aa	FBpp0078044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS41 Q24142	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Hr78-RE	FBtr0303653	2182	601aa	FBpp0292670	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS41 Q24142	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Hr78-RF	FBtr0303654	2175	601aa	FBpp0292671	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS41 Q24142	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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