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DB built by FlyBase

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Gene: Msr-110 FBgn0015766

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Description

Msr-110

Gene Synonyms

Location

Primary_assembly 3L: 5,566,919-5,577,348 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants) and 70 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Msr-110-RC	FBtr0077133	2600	625aa	FBpp0076839	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGD4 Q8IQ63	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Msr-110-RA	FBtr0077131	2722	617aa	FBpp0076837	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAN7 Q8IGD4 Q9VRM5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Msr-110-RB	FBtr0077132	2695	608aa	FBpp0076838	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q26459	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Msr-110-RD	FBtr0345001	2686	605aa	FBpp0311254	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAN7 X2JCI8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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