Pitslre
Primary_assembly 3L: 20,771,528-20,776,931 forward strand.
BDGP6.32:AE014296.5
This gene has 5 transcripts (splice variants), 122 orthologues and 14 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Pitslre-RA | FBtr0078247 | 3355 | 952aa | FBpp0077905 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VPC0 | NM_001259922.2 NM_001259923.2 NM_001275193.1 NM_140994 NM_140994.4 NM_168869.3 NP_001246851.1 NP_001246852.1 NP_001262122.1 NP_649251 NP_649251.2 NP_730563.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Pitslre-RE | FBtr0304935 | 4391 | 778aa | FBpp0293474 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D3PFF6 | NM_001259922 NM_001259922.2 NM_001259923.2 NM_001275193.1 NP_001246851 NP_001246851.1 NP_001246852.1 NP_001262122.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Pitslre-RG | FBtr0331523 | 3939 | 778aa | FBpp0303913 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D3PFF6 | NM_001259922.2 NM_001259923.2 NM_001275193 NM_001275193.1 NP_001246851.1 NP_001246852.1 NP_001262122 NP_001262122.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Pitslre-RF | FBtr0304936 | 3620 | 778aa | FBpp0293475 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D3PFF6 | NM_001259922.2 NM_001259923 NM_001259923.2 NM_001275193.1 NP_001246851.1 NP_001246852 NP_001246852.1 NP_001262122.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Pitslre-RC | FBtr0078250 | 3296 | 952aa | FBpp0077908 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VPC0 | NM_001259922.2 NM_001259923.2 NM_001275193.1 NM_140994.4 NM_168869 NM_168869.3 NP_001246851.1 NP_001246852.1 NP_001262122.1 NP_649251.2 NP_730563 NP_730563.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
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