Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene gain/loss tree
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: Ppa FBgn0020257

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Description

Partner of paired

Gene Synonyms

Location

Primary_assembly 2R: 22,684,955-22,688,987 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 3 transcripts (splice variants), 151 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Ppa-RB	FBtr0330249	3463	562aa	FBpp0303282	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF28	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Ppa-RC	FBtr0343014	4033	538aa	FBpp0309766	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W214	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Ppa-RA	FBtr0071924	3463	538aa	FBpp0071835	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W214	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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