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DB built by FlyBase

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Gene: Papss FBgn0020389

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Description

PAPS synthetase

Gene Synonyms

Location

Primary_assembly 3L: 19,845,293-19,860,925 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 8 transcripts (splice variants) and 152 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Papss-RD	FBtr0074888	2457	657aa	FBpp0074657	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9QP52 Q8IQV1	NM_168824 NM_168824.3 NP_730460 NP_730460.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Papss-RF	FBtr0111108	2729	630aa	FBpp0110399	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUT8	NM_001043152 NM_001043152.2 NM_001275144.1 NM_079447.4 NP_001036617 NP_001036617.1 NP_001262073.1 NP_524171.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Papss-RH	FBtr0332147	2686	630aa	FBpp0304457	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUT8	NM_001043152.2 NM_001275144 NM_001275144.1 NM_079447.4 NP_001036617.1 NP_001262073 NP_001262073.1 NP_524171.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Papss-RC	FBtr0074886	2500	629aa	FBpp0074655	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961A8	NM_001275143.1 NM_168821.3 NM_168822.3 NM_168823 NM_168823.3 NP_001262072.1 NP_730457.1 NP_730458.1 NP_730459 NP_730459.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Papss-RG	FBtr0332146	2432	629aa	FBpp0304456	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961A8	NM_001275143 NM_001275143.1 NM_168821.3 NM_168822.3 NM_168823.3 NP_001262072 NP_001262072.1 NP_730457.1 NP_730458.1 NP_730459.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Papss-RA	FBtr0074887	2417	629aa	FBpp0074656	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961A8	NM_001275143.1 NM_168821 NM_168821.3 NM_168822.3 NM_168823.3 NP_001262072.1 NP_730457 NP_730457.1 NP_730458.1 NP_730459.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Papss-RE	FBtr0074889	2396	630aa	FBpp0074658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUT8 Q9VW48	NM_001043152.2 NM_001275144.1 NM_079447 NM_079447.4 NP_001036617.1 NP_001262073.1 NP_524171 NP_524171.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Papss-RB	FBtr0074885	2394	629aa	FBpp0074654	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961A8	NM_001275143.1 NM_168821.3 NM_168822 NM_168822.3 NM_168823.3 NP_001262072.1 NP_730457.1 NP_730458 NP_730458.1 NP_730459.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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Gene-based displays