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DB built by FlyBase

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Gene: VhaSFD FBgn0027779

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Description

Vacuolar H[+]-ATPase SFD subunit

Gene Synonyms

Location

Primary_assembly 2L: 16,722,883-16,727,826 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 4 transcripts (splice variants) and 135 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
VhaSFD-RB	FBtr0080941	2376	542aa	FBpp0080495	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_165177 NM_165177.2 NP_723992 NP_723992.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
VhaSFD-RE	FBtr0335143	2503	468aa	FBpp0307142	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDK5 Q9V3J1	NM_001273581 NM_001273581.1 NM_078861.3 NM_165177.2 NM_165178.2 NP_001260510 NP_001260510.1 NP_523585.2 NP_723992.1 NP_723993.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
VhaSFD-RD	FBtr0080942	2247	441aa	FBpp0080496	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_165178 NM_165178.2 NP_723993 NP_723993.1	-
VhaSFD-RA	FBtr0080940	2154	468aa	FBpp0080494	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDK5 Q9V3J1	NM_001273581.1 NM_078861 NM_078861.3 NM_165177.2 NM_165178.2 NP_001260510.1 NP_523585 NP_523585.2 NP_723992.1 NP_723993.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays