Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: MTA1-like FBgn0027951

.

Description

Metastasis associated 1-like

Gene Synonyms

Location

Primary_assembly 3R: 5,638,655-5,648,738 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 156 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
MTA1-like-RD	FBtr0330315	4167	922aa	FBpp0303347	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG70	NM_001275364 NM_001275364.2 NP_001262293 NP_001262293.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
MTA1-like-RC	FBtr0290206	4976	853aa	FBpp0288645	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0T5 Q6AWS2	NM_001144539 NM_001144539.2 NP_001138011 NP_001138011.1	-
MTA1-like-RA	FBtr0078733	4167	880aa	FBpp0078382	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95TP6 Q9U6X3 Q9VNF6	NM_169086 NM_169086.3 NP_730976 NP_730976.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
MTA1-like-RB	FBtr0078734	4059	844aa	FBpp0078383	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RR0 Q9VNF7	NM_141309 NM_141309.4 NP_649566 NP_649566.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.