Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: x16 FBgn0028554

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Description

x16 splicing factor

Gene Synonyms

Location

Primary_assembly 2L: 6,914,301-6,920,210 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 2 transcripts (splice variants), 142 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
x16-RA	FBtr0079368	1707	258aa	FBpp0078996	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V3V0	NM_164718 NM_164718.2 NP_723226 NP_723226.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
x16-RB	FBtr0332328	1784	257aa	FBpp0304606	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PC85	NM_001273239 NM_001273239.2 NP_001260168 NP_001260168.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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