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DB built by FlyBase

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Gene: Lnk FBgn0028717

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Description

Lnk

Gene Synonyms

Location

Primary_assembly 3R: 25,888,542-25,893,270 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants) and 63 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Lnk-RD	FBtr0339160	3128	728aa	FBpp0308304	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHY5 Q9U8B9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Lnk-RC	FBtr0084935	3287	723aa	FBpp0084309	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K137	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lnk-RE	FBtr0339161	3161	613aa	FBpp0308305	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHS0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lnk-RA	FBtr0084937	3113	723aa	FBpp0084311	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K137	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lnk-RF	FBtr0339162	2951	608aa	FBpp0308306	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LIP5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lnk-RB	FBtr0084936	2918	723aa	FBpp0084310	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K137	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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