Fmr1
Primary_assembly 3R: 10,101,420-10,110,121 reverse strand.
BDGP6.32:AE014297.3
This gene has 11 transcripts (splice variants) and 121 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Fmr1-RG | FBtr0308123 | 4426 | 729aa | FBpp0300445 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K618 | NM_001260088 NM_001260088.1 NP_001247017 NP_001247017.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Fmr1-RC | FBtr0082198 | 4426 | 681aa | FBpp0081676 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A126GUS7 | NM_001316514.1 NM_001316515.1 NM_169324 NM_169324.2 NM_169325.3 NP_001303443.1 NP_001303444.1 NP_731443 NP_731443.1 NP_731444.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Fmr1-RE | FBtr0082200 | 3920 | 643aa | FBpp0081678 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_169326 NM_169326.3 NP_731445 NP_731445.1 | - |
| Fmr1-RF | FBtr0301386 | 3773 | 646aa | FBpp0290600 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B3LF78 | NM_001170109 NM_001170109.2 NP_001163580 NP_001163580.1 | - |
| Fmr1-RI | FBtr0335049 | 3752 | 639aa | FBpp0307053 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFN9 | NM_001275519 NM_001275519.1 NP_001262448 NP_001262448.1 | - |
| Fmr1-RA | FBtr0082197 | 3381 | 684aa | FBpp0081675 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9NFU0 | NM_001316514.1 NM_001316515.1 NM_137801 NM_137801.4 NM_169324.2 NM_169325.3 NM_169326.3 NM_169327.2 NP_001303443.1 NP_001303444.1 NP_611645 NP_611645.1 NP_731443.1 NP_731444.1 NP_731445.1 NP_731446.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Fmr1-RJ | FBtr0347104 | 2985 | 681aa | FBpp0312465 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A126GUS7 | NM_001316514 NM_001316514.1 NM_001316515.1 NM_169324.2 NM_169325.3 NP_001303443 NP_001303443.1 NP_001303444.1 NP_731443.1 NP_731444.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Fmr1-RD | FBtr0082199 | 2967 | 681aa | FBpp0081677 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A126GUS7 | NM_001316514.1 NM_001316515.1 NM_169324.2 NM_169325 NM_169325.3 NP_001303443.1 NP_001303444.1 NP_731443.1 NP_731444 NP_731444.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Fmr1-RK | FBtr0347105 | 2896 | 681aa | FBpp0312466 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A126GUS7 | NM_001316514.1 NM_001316515 NM_001316515.1 NM_169324.2 NM_169325.3 NP_001303443.1 NP_001303444 NP_001303444.1 NP_731443.1 NP_731444.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Fmr1-RH | FBtr0335048 | 2266 | 577aa | FBpp0307052 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KGP6 | NM_001275518 NM_001275518.1 NP_001262447 NP_001262447.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Fmr1-RB | FBtr0082196 | 2266 | 529aa | FBpp0081674 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B3G0S3 B3G0S8 B3G0T0 | NM_169327 NM_169327.2 NP_731446 NP_731446.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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