Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: Tsp42Ea FBgn0029508

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Description

Tetraspanin 42Ea

Gene Synonyms

Location

Primary_assembly 2R: 6,992,676-7,004,259 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 3 transcripts (splice variants), 231 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Tsp42Ea-RA	FBtr0086171	1118	226aa	FBpp0085503	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1I4	NM_080273 NM_080273.3 NM_144389.2 NM_165502.2 NP_525012 NP_525012.2 NP_652646.1 NP_724524.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Tsp42Ea-RB	FBtr0086172	1113	226aa	FBpp0085504	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1I4 Q9U3V4	NM_080273.3 NM_144389 NM_144389.2 NM_165502.2 NP_525012.2 NP_652646 NP_652646.1 NP_724524.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Tsp42Ea-RC	FBtr0086173	1107	226aa	FBpp0085505	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1I4	NM_080273.3 NM_144389.2 NM_165502 NM_165502.2 NP_525012.2 NP_652646.1 NP_724524 NP_724524.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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