Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
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Supporting evidence
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- Gene history

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DB built by FlyBase

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Gene: CG3556 FBgn0029708

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Location

Primary_assembly X: 4,530,231-4,535,464 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 2 transcripts (splice variants) and 111 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG3556-RB	FBtr0308916	3890	595aa	FBpp0301042	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NGQ5 Q9W4K2	NM_001258600 NM_001258600.2 NM_131936.3 NP_001245529 NP_001245529.1 NP_572164.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG3556-RA	FBtr0070674	2426	595aa	FBpp0070642	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NGQ5 Q9W4K2	NM_001258600.2 NM_131936 NM_131936.3 NP_001245529.1 NP_572164 NP_572164.2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays