Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: SK FBgn0029761

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Description

small conductance calcium-activated potassium channel

Gene Synonyms

Location

Primary_assembly X: 5,340,236-5,405,138 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 14 transcripts (splice variants) and 242 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
SK-RS	FBtr0344556	8050	1174aa	FBpp0310909	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JDR8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
SK-RM	FBtr0301953	8828	927aa	FBpp0291165	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SK-RP	FBtr0331603	8050	979aa	FBpp0303993	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGG9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SK-RQ	FBtr0331604	5179	928aa	FBpp0303994	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH41	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SK-RO	FBtr0331602	4946	960aa	FBpp0303992	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDT6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SK-RK	FBtr0301951	4813	927aa	FBpp0291163	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVW5	-	-
SK-RU	FBtr0344558	4813	1122aa	FBpp0310911	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JAI8	-	-
SK-RL	FBtr0301952	3885	576aa	FBpp0291164	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
SK-RT	FBtr0344557	3885	771aa	FBpp0310910	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JE69	-	-
SK-RH	FBtr0300467	3729	524aa	FBpp0289694	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T3J7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SK-RR	FBtr0344555	3729	719aa	FBpp0310908	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JIE0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SK-RI	FBtr0301949	3723	522aa	FBpp0291161	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
SK-RJ	FBtr0301950	3556	812aa	FBpp0291162	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YIM8 A9YIN1 F6J3I0 F6JAM3 F6JAM6	-	-
SK-RN	FBtr0301954	3484	685aa	FBpp0291166	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A346DAQ0	-	-

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Summary

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