Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG3842 FBgn0029866

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Location

Primary_assembly X: 6,337,762-6,343,731 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 270 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG3842-RD	FBtr0331395	2655	406aa	FBpp0303812	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W404	NM_001272341.1 NM_001272342 NM_001272342.2 NM_132088.3 NM_206633.3 NP_001259270.1 NP_001259271 NP_001259271.1 NP_572316.1 NP_996356.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P1
CG3842-RC	FBtr0331394	2049	406aa	FBpp0303811	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DNM5 Q9W404	NM_001272341 NM_001272341.1 NM_001272342.2 NM_132088.3 NM_206633.3 NP_001259270 NP_001259270.1 NP_001259271.1 NP_572316.1 NP_996356.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P1
CG3842-RB	FBtr0070904	1875	406aa	FBpp0070869	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W404	NM_001272341.1 NM_001272342.2 NM_132088.3 NM_206633 NM_206633.3 NP_001259270.1 NP_001259271.1 NP_572316.1 NP_996356 NP_996356.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P1
CG3842-RA	FBtr0070903	1765	406aa	FBpp0070868	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W404	NM_001272341.1 NM_001272342.2 NM_132088 NM_132088.3 NM_206633.3 NP_001259270.1 NP_001259271.1 NP_572316 NP_572316.1 NP_996356.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P1

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Summary

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Gene-based displays