Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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- Structural variants
Gene expression
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Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG1677 FBgn0029941

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Location

Primary_assembly X: 7,281,089-7,405,797 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 111 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG1677-RB	FBtr0303415	4077	1000aa	FBpp0292476	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W3R9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG1677-RD	FBtr0339820	4100	999aa	FBpp0308853	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E5N9 X2JE07	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG1677-RA	FBtr0089712	3679	1000aa	FBpp0088653	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E5N1 Q0E5N2 Q0E5N3 Q0E5N5 Q0E5N6 Q0E5N7 Q0E5P5 Q0E5P7 Q8MYV4 Q9W3R9	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG1677-RC	FBtr0339819	3461	1000aa	FBpp0308852	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W3R9	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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