Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: CG10353 FBgn0030349

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Gene Synonyms

Location

Primary_assembly X: 11,877,737-11,887,162 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 7 transcripts (splice variants), 66 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG10353-RD	FBtr0114452	4774	1029aa	FBpp0112944	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3PFF9 Q76NS2	NM_001258704.1 NM_001272540.1 NM_167312 NM_167312.4 NP_001245633.1 NP_001259469.1 NP_727578 NP_727578.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG10353-RI	FBtr0331594	4771	984aa	FBpp0303984	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VYS8	NM_001272543 NM_001272543.1 NM_132534.4 NP_001259472 NP_001259472.1 NP_572762.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG10353-RE	FBtr0308070	4569	1029aa	FBpp0300413	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q76NS2	NM_001258704 NM_001258704.1 NM_001272540.1 NM_167312.4 NP_001245633 NP_001245633.1 NP_001259469.1 NP_727578.3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG10353-RF	FBtr0331591	4492	1029aa	FBpp0303981	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q76NS2	NM_001258704.1 NM_001272540 NM_001272540.1 NM_167312.4 NP_001245633.1 NP_001259469 NP_001259469.1 NP_727578.3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG10353-RK	FBtr0344702	4482	1000aa	FBpp0311035	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJJ8 Q8MT62	NM_001272544 NM_001272544.2 NP_001259473 NP_001259473.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG10353-RL	FBtr0344703	4290	1013aa	FBpp0311036	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGX9	NM_001272541 NM_001272541.2 NP_001259470 NP_001259470.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG10353-RC	FBtr0114451	4203	984aa	FBpp0112943	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VYS8	NM_001272543.1 NM_132534 NM_132534.4 NP_001259472.1 NP_572762 NP_572762.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays