Summary
- Splice variants
- Transcript comparison
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Sequence
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: Rab40 FBgn0030391

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Description

Rab40

Gene Synonyms

Location

Primary_assembly X: 12,459,796-12,463,112 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 3 transcripts (splice variants), 78 orthologues and 33 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Rab40-RB	FBtr0073669	1618	265aa	FBpp0073502	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR80	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Rab40-RA	FBtr0073668	1588	255aa	FBpp0073501	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RQ2 Q9VYM8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Rab40-RC	FBtr0339841	1449	255aa	FBpp0308873	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VYM8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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