Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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Pan-taxonomic Compara
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- GO: Molecular function
- GO: Cellular component
- GO: Biological process
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG15742 FBgn0030462

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Location

Primary_assembly X: 13,257,392-13,258,495 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 3 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG15742-RA	FBtr0073733	927	203aa	FBpp0073564	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q7YJI3 A0A3S5ZWS1 A0A3S5ZZE9 A9YH16 A9YH19 A9YH21 A9YH26 A9YH27 F5XVH0 Q9VYF5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG15742-RB	FBtr0290202	976	136aa	FBpp0288641	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YH20 B7Z148	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG15742-RC	FBtr0290203	907	136aa	FBpp0288642	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z148	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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