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- Splice variants
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- GO: Biological process
- GO: Molecular function
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DB built by FlyBase

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Gene: Rab3-GEF FBgn0030613

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Description

Rab3 GDP-GTP exchange factor

Gene Synonyms

Location

Primary_assembly X: 15,089,682-15,113,762 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 10 transcripts (splice variants) and 211 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Rab3-GEF-RH	FBtr0330401	8285	2154aa	FBpp0303427	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEM6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Rab3-GEF-RG	FBtr0330400	8459	1819aa	FBpp0303426	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJN3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rab3-GEF-RK	FBtr0452147	8459	2147aa	FBpp0402897	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1Z1CSK9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rab3-GEF-RD	FBtr0307208	8390	2130aa	FBpp0298037	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NGF2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rab3-GEF-RE	FBtr0307209	8372	2124aa	FBpp0298038	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JUX2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rab3-GEF-RJ	FBtr0452146	8363	2115aa	FBpp0402896	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1Z1CGX2 A0A3G1DKV1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rab3-GEF-RI	FBtr0346798	8285	2095aa	FBpp0312376	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0X7U5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rab3-GEF-RC	FBtr0307207	8252	2084aa	FBpp0298036	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VXY2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rab3-GEF-RL	FBtr0452148	6000	1882aa	FBpp0402898	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1Z1CGY3 D2NUF8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rab3-GEF-RF	FBtr0307210	5820	1822aa	FBpp0298039	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEH3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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